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This documentation is for a legacy ScanImage version. The current documentation is ScanImage 2019.

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SI.LINE_FORMAT_VERSION = 1
SI.TIFF_FORMAT_VERSION = 3
SI.VERSION_MAJOR = '2016b'
SI.VERSION_MINOR = '1'
SI.acqState = 'grab'
SI.acqsPerLoop = 100
SI.extTrigEnable = 0
SI.hBeams.beamCalibratedStatus = [true true]
SI.hBeams.directMode = [false false]
SI.hBeams.enablePowerBox = false
SI.hBeams.flybackBlanking = true
SI.hBeams.interlaceDecimation = [1 1]
SI.hBeams.interlaceOffset = [0 0]
SI.hBeams.lengthConstants = [Inf Inf]
SI.hBeams.powerBoxEndFrame = Inf
SI.hBeams.powerBoxStartFrame = 1
SI.hBeams.powerBoxes.rect = [0.25 0.25 0.5 0.5]
SI.hBeams.powerBoxes.powers = [NaN NaN]
SI.hBeams.powerBoxes.name = ''
SI.hBeams.powerBoxes.oddLines = true
SI.hBeams.powerBoxes.evenLines = true
SI.hBeams.powerLimits = [100 100]
SI.hBeams.powers = [1 1]
SI.hBeams.pzAdjust = [false false]
SI.hBeams.pzCustom = {[] []}
SI.hBeams.stackEndPower = [NaN NaN]
SI.hBeams.stackStartPower = [NaN NaN]
SI.hBeams.stackUseStartPower = false
SI.hBeams.stackUserOverrideLz = false
SI.hChannels.channelAdcResolution = {16 16 16 16}
SI.hChannels.channelDisplay = 1
SI.hChannels.channelInputRange = {[-1 1] [-1 1] [-1 1] [-1 1]}
SI.hChannels.channelLUT = {[25 2728] [0 100] [0 100] [0 100]}
SI.hChannels.channelMergeColor = {'red' 'red' 'red' 'red'}
SI.hChannels.channelName = {'Channel 1' 'Channel 2' 'Channel 3' 'Channel 4'}
SI.hChannels.channelOffset = [229 52 2 103]
SI.hChannels.channelSave = 1
SI.hChannels.channelSubtractOffset = [true true true true]
SI.hChannels.channelType = {'stripe' 'stripe' 'stripe' 'stripe'}
SI.hChannels.channelsActive = 1
SI.hChannels.channelsAvailable = 4
SI.hChannels.loggingEnable = 1
SI.hConfigurationSaver.cfgFilename = ''
SI.hConfigurationSaver.usrFilename = ''
SI.hCycleManager.cycleIterIdxTotal = 0
SI.hCycleManager.cyclesCompleted = 0
SI.hCycleManager.enabled = false
SI.hCycleManager.itersCompleted = 0
SI.hCycleManager.totalCycles = 1
SI.hDisplay.autoScaleSaturationFraction = [0.1 0.01]
SI.hDisplay.channelsMergeEnable = false
SI.hDisplay.channelsMergeFocusOnly = false
SI.hDisplay.displayRollingAverageFactor = 1
SI.hDisplay.displayRollingAverageFactorLock = false
SI.hDisplay.enableScanfieldDisplays = false
SI.hDisplay.lineScanHistoryLength = 1000
SI.hDisplay.renderer = 'auto'
SI.hDisplay.scanfieldDisplayColumns = 5
SI.hDisplay.scanfieldDisplayRows = 5
SI.hDisplay.scanfieldDisplayTilingMode = 'Auto'
SI.hDisplay.scanfieldDisplays.enable = false
SI.hDisplay.scanfieldDisplays.name = 'Display 1'
SI.hDisplay.scanfieldDisplays.channel = 1
SI.hDisplay.scanfieldDisplays.roi = 1
SI.hDisplay.scanfieldDisplays.z = 0
SI.hDisplay.selectedZs = []
SI.hDisplay.showScanfieldDisplayNames = false
SI.hDisplay.volumeDisplayStyle = '3D'
SI.hFastZ.actuatorLag = 0
SI.hFastZ.discardFlybackFrames = false
SI.hFastZ.enable = true
SI.hFastZ.enableFieldCurveCorr = false
SI.hFastZ.flybackTime = 0
SI.hFastZ.hasFastZ = true
SI.hFastZ.nonblockingMoveInProgress = false
SI.hFastZ.numDiscardFlybackFrames = 0
SI.hFastZ.numFramesPerVolume = 10
SI.hFastZ.numVolumes = 10
SI.hFastZ.positionAbsolute = 0.133872
SI.hFastZ.positionTarget = 0
SI.hFastZ.scannerBandwidth = 1000
SI.hFastZ.useArbitraryZs = false
SI.hFastZ.userZs = 0
SI.hFastZ.volumePeriodAdjustment = -0.0006
SI.hFastZ.waveformType = 'sawtooth'
SI.hIntegrationRoiManager.enable = false
SI.hIntegrationRoiManager.enableDisplay = true
SI.hIntegrationRoiManager.integrationHistoryLength = 1000
SI.hIntegrationRoiManager.postProcessFcn = @scanimage.components.integrationRois.integrationPostProcessingFcn
SI.hMotionManager.detectMotionFcn = @scanimage.components.motionCorrection.fftCorr_detectMotionFcn
SI.hMotionManager.enable = false
SI.hMotionManager.gpuAcceleration = false
SI.hMotionManager.motionHistoryLength = 30
SI.hMotionManager.referenceChannel = 1
SI.hMotionManager.referenceImagePreprocessFcn = @scanimage.components.motionCorrection.fftCorr_preprocessFcn
SI.hMotionManager.referenceZ = 0
SI.hMotionManager.showMotionDisplay = false
SI.hMotors.azimuth = 0
SI.hMotors.dimNonblockingMoveInProgress = [false false false]
SI.hMotors.elevation = 0
SI.hMotors.motorFastMotionThreshold = 100
SI.hMotors.motorPosition = [0 0 133.906]
SI.hMotors.motorPositionTarget = [0 0 133.906]
SI.hMotors.motorStepLimit = Inf
SI.hMotors.motorToRefTransform = [NaN NaN NaN;NaN NaN NaN;NaN NaN NaN]
SI.hMotors.motorToRefTransformAbsolute = [NaN NaN NaN;NaN NaN NaN;NaN NaN NaN]
SI.hMotors.motorToRefTransformValid = false
SI.hMotors.nonblockingMoveInProgress = false
SI.hMotors.scanimageToMotorTF = [1 0 0 0;0 1 0 0;0 0 1 0;0 0 0 1]
SI.hMotors.userDefinedPositions = []
SI.hPhotostim.allowMultipleOutputs = false
SI.hPhotostim.autoTriggerPeriod = 0
SI.hPhotostim.compensateMotionEnabled = true
SI.hPhotostim.completedSequences = 0
SI.hPhotostim.logging = false
SI.hPhotostim.monitoring = false
SI.hPhotostim.monitoringSampleRate = 9000
SI.hPhotostim.nextStimulus = 1
SI.hPhotostim.numOutputs = 0
SI.hPhotostim.numSequences = Inf
SI.hPhotostim.sequencePosition = 1
SI.hPhotostim.sequenceSelectedStimuli = []
SI.hPhotostim.status = 'Offline'
SI.hPhotostim.stimImmediately = false
SI.hPhotostim.stimSelectionAssignment = []
SI.hPhotostim.stimSelectionDevice = ''
SI.hPhotostim.stimSelectionTerms = []
SI.hPhotostim.stimSelectionTriggerTerm = []
SI.hPhotostim.stimTriggerTerm = 1
SI.hPhotostim.stimulusMode = 'sequence'
SI.hPhotostim.syncTriggerTerm = []
SI.hPhotostim.zMode = '3D'
SI.hPmts.autoPower = []
SI.hPmts.bandwidths = []
SI.hPmts.gains = []
SI.hPmts.names = []
SI.hPmts.offsets = []
SI.hPmts.powersOn = []
SI.hPmts.tripped = []
SI.hRoiManager.forceSquarePixelation = true
SI.hRoiManager.forceSquarePixels = true
SI.hRoiManager.imagingFovDeg = [-6.75 -6.75;6.75 -6.75;6.75 6.75;-6.75 6.75]
SI.hRoiManager.imagingFovUm = [-101.25 -101.25;101.25 -101.25;101.25 101.25;-101.25 101.25]
SI.hRoiManager.linePeriod = 6.31618e-05
SI.hRoiManager.linesPerFrame = 512
SI.hRoiManager.mroiEnable = false
SI.hRoiManager.pixelsPerLine = 512
SI.hRoiManager.scanAngleMultiplierFast = 1
SI.hRoiManager.scanAngleMultiplierSlow = 1
SI.hRoiManager.scanAngleShiftFast = 0
SI.hRoiManager.scanAngleShiftSlow = 0
SI.hRoiManager.scanFramePeriod = 0.03335
SI.hRoiManager.scanFrameRate = 29.985
SI.hRoiManager.scanRotation = 0
SI.hRoiManager.scanType = 'frame'
SI.hRoiManager.scanVolumeRate = 2.9985
SI.hRoiManager.scanZoomFactor = 1
SI.hScan2D.beamClockDelay = 1.5e-06
SI.hScan2D.beamClockExtend = 0
SI.hScan2D.bidirectional = true
SI.hScan2D.channelOffsets = [229 52 2 103]
SI.hScan2D.channels = {}
SI.hScan2D.channelsAdcResolution = 16
SI.hScan2D.channelsAutoReadOffsets = 0
SI.hScan2D.channelsAvailable = 4
SI.hScan2D.channelsDataType = 'int16'
SI.hScan2D.channelsFilter = 'Bessel'
SI.hScan2D.channelsInputRanges = {[-1 1] [-1 1] [-1 1] [-1 1]}
SI.hScan2D.channelsSubtractOffsets = [true true true true]
SI.hScan2D.fillFractionSpatial = 0.9
SI.hScan2D.fillFractionTemporal = 0.712867
SI.hScan2D.flybackTimePerFrame = 0.001
SI.hScan2D.flytoTimePerScanfield = 0.001
SI.hScan2D.fovCornerPoints = [-13 -7.5;13 -7.5;13 7.5;-13 7.5]
SI.hScan2D.keepResonantScannerOn = false
SI.hScan2D.linePhase = -6.66667e-08
SI.hScan2D.linePhaseMode = 'Nearest Neighbor'
SI.hScan2D.logAverageFactor = 1
SI.hScan2D.logFramesPerFile = Inf
SI.hScan2D.logFramesPerFileLock = false
SI.hScan2D.maxSampleRate = 1.2e+08
SI.hScan2D.name = 'ResScanner'
SI.hScan2D.nominalFovCornerPoints = [-13 -7.5;13 -7.5;13 7.5;-13 7.5]
SI.hScan2D.pixelBinFactor = 1
SI.hScan2D.resonantLimitedFovMode = true
SI.hScan2D.sampleRate = 1.2e+08
SI.hScan2D.scanPixelTimeMaxMinRatio = 2.5
SI.hScan2D.scanPixelTimeMean = 8.79557e-08
SI.hScan2D.scannerFrequency = 7916.17
SI.hScan2D.scannerToRefTransform = [1 0 0;0 1 0;0 0 1]
SI.hScan2D.scannerType = 'Resonant'
SI.hScan2D.settleTimeFraction = 0
SI.hScan2D.simulated = false
SI.hScan2D.trigAcqEdge = 'rising'
SI.hScan2D.trigAcqInTerm = 'PFI1'
SI.hScan2D.trigNextEdge = 'rising'
SI.hScan2D.trigNextInTerm = 'PFI3'
SI.hScan2D.trigNextStopEnable = true
SI.hScan2D.trigStopEdge = 'rising'
SI.hScan2D.trigStopInTerm = 'PFI2'
SI.hScan2D.uniformSampling = false
SI.hScan2D.useNonlinearResonantFov2VoltsCurve = false
SI.hStackManager.framesPerSlice = 1
SI.hStackManager.numSlices = 10
SI.hStackManager.shutterCloseMinZStepSize = 0
SI.hStackManager.slowStackWithFastZ = false
SI.hStackManager.stackReturnHome = true
SI.hStackManager.stackSlicesDone = 0
SI.hStackManager.stackStartCentered = false
SI.hStackManager.stackZEndPos = NaN
SI.hStackManager.stackZStartPos = NaN
SI.hStackManager.stackZStepSize = 40
SI.hStackManager.stageDependentZs = false
SI.hStackManager.zPowerReference = 0
SI.hStackManager.zs = [0 40 80 120 160 200 240 280 320 360]
SI.hUserFunctions.userFunctionsCfg = []
SI.hUserFunctions.userFunctionsOverride = []
SI.hUserFunctions.userFunctionsUsr = []
SI.hWSConnector.enable = false
SI.hWaveformManager.optimizedScanners = {}
SI.imagingSystem = 'ResScanner'
SI.loopAcqInterval = 10
SI.objectiveResolution = 15

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