
Each motor axis either moves the objective (MOM configuration) or the sample stage. This information should be entered in the Motor Configuration section of the Machine Configuration Editor ('Effect').
Ensure that the motor axes move the sample as described above by adjusting the axis scaling. A scaling factor of -1 inverts the axis movement.
Note: the 'Scaling' and 'Effect' settings in the configuration editor can be edited without restarting ScanImage. After adjusting the settings, click 'Apply' to update the ScanImage coordinate system.